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Build, Run, Visualize
Contribute
Examples
Download
Credits
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ITK
GitHub
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Bridge
VtkGlue
Convert an itk::Image to vtkImageData
Convert an RGB itk::Image to vtkImageData
Convert RGB vtkImageData to an itk::Image
Convert vtkImageData to an itk::Image
Visualize an Evolving Dense 2D Level Set as Elevation Map
Visualize an Evolving Dense 2D Level-Set Zero-Set
Visualize a Static Dense 2D Level Set as Elevation Map
Visualize a Static Dense 2D Level-Set Zero-Set
Visualize a Static Sparse Malcolm 2D Level-Set Layers
Visualize a Static Sparse Shi 2D Level-Set Layers
Visualize a Static Sparse Whitaker 2D Level-Set Layers
VTK Image to ITK Image
NumPy
Interface ITK with NumPy Array
Bridging ITK image data with NumPy array
Core
Common
Add Noise To Binary Image
Add Offset To Index
Apply a Filter Only to a Specified Region of an Image
Apply Custom Operation to Each Pixel in Image
Bounding Box of a Point Set
Bresenham Line
Build a Hello World Program
Cast Vector Image to Another Type
Check if Module Is Present
Compute Time Between Points
Concept Checking Is Floating Point
Concept Checking Is Same Dimension
Concept Checking Is Same Type
Convert Array to Image
Covariant Vector Dot Product
Covariant Vector Norm
Create a Backward Difference Operator
Create a CovariantVector
Create a Fixed Array
Create a Index
Create a PointSet
Create a Size
Create a Vector
Create an Image
Create an Image Region
Create an Image of Vectors
Create an RGB Image
Create Another Instance Of A Filter
Create Another Instance of an Image
Create Derivative Kernel
Create Forward Difference Kernel
Create Gaussian Derivative Kernel
Create Gaussian Kernel
Create Laplacian Kernel
Create Sobel Kernel
Create Vector Image
Crop Image by Specifying Region
Deep Copy Image
Demonstrate All Operators
Direct Warning to File
Display Image
Distance Between Indices
Distance Between Points
Do Data Parallel Threading
Duplicate an Image
Eagerly Load Python Modules
Filter and ParallelizeImageRegion Comparison
Filter Image
Filter Image Using Multiple Threads
Filter Image Without Copying Its Data
Find Max and Min in Image
Generate the Offsets of a Shaped Image Neighborhood
Get Image Size
Get Name of Class
Get or Set Member Variable of ITK Class
Get Type Basic Information
Iterate Over an Image Buffer and an Index Range
Image Region Intersection
Image Region Overlap
Import Pixel Buffer Into an Image
In Place Filter of Image
Is Pixel Inside Region
Iterate Image Starting at Seed
Iterate Line Through Image
Iterate Line Through Image Without Write Access
Iterate on a Vector Container
Iterate Over a Region With a Shaped Neighborhood Iterator
Iterate Over a Region With a Shaped Neighborhood Iterator Manually
Iterate Over Image While Skipping Specific Region
Iterate Region in Image With Access to Index Without Write Access
Iterate Region in Image With Access to Current Index With Write Access
Iterate Region in Image With Neighborhood
Iterate Region in Image With Neighborhood Without Write Access
Iterate Region in Image With Write Access
Iterate Region in Image Without Write Access
Make Out of Bounds Pixels Return Constant Value
Make Part of an Image Transparent
Matrix
Matrix Inverse
Mersenne Twister Random Integer Generator
Mersenne Twister Random Number Generator
Mini Pipeline
Multiple Inputs of Different Type
Multiple Inputs of Same Type
Multiple Outputs of Different Type
Multiple Outputs of Same Type
Multi-thread Oil Painting
Neighborhood Iterator on Vector Image
Observe an Event
Pass Image to Function
Permute Sequence of Indices
Pi Constant
Print ITK Python Module Loading
Produce Image Programmatically
Random Selection of Pixels From Region
Random Select Pixel From Region Without Replacing
Read a PointSet
Read Write Vector Image
Re-Run Pipeline With Changing Largest Possible Region
Return Object From Function
Set the Default Number of Threads
Set Pixel Value in One Image
Sort ITK Index
Store Non-Pixel Data In Image
Stream a Pipeline
Throw Exception
Trace Memory Between Points
Try Catch Exception
Use ParallelizeImageRegion
Variable Length Vector
Vector Dot Product
Watch a Filter
Write a PointSet
ImageAdaptors
Add Constant to Every Pixel Without Duplicating Memory
Extract Channel of Image With Multiple Components
Present Image After Operation
Process Nth Component of Vector Image
View Component Vector Image as Scalar Image
ImageFunction
Compute Median of Image at Pixel
Linearly Interpolate Position in Image
Multiply Kernel With an Image at Location
Resample Segmented Image
Mesh
Access data in cells
Add Points and Edges
Calculate Area and Volume of Simplex Mesh
Convert Mesh to Unstructered Grid
Convert Triangle Mesh to Binary Image
Extract Iso Surface
Translate One Mesh
Working With Point and Cell Data
Write Mesh to VTP
QuadEdgeMesh
Create Triangular Quad Edge Mesh
Cut Mesh
Extract Vertex on Mesh Boundaries
Get List of Faces Around a Given Vertex
Print Vertex Neighbors
SpatialObjects
Blob
Contour Spatial Object
Convert Spatial Object to Image
Create a Line Spatial Object
Ellipse
TestKernel
Generate Random Image
Transform
Apply Affine Transform From Homogeneous Matrix and Resample
Cartesian to Azimuth Elevation
Copy a CompositeTransform
Copy a Non-CompositeTransform
Global Registration Two Images (Affine)
Global Registration of Two Images (BSpline)
Mutual Information Affine
Mutual Information Metric
Scale an Image
Translate a Vector Image
Translate Image
Deform a Volume With a Thin Plate Spline
External
Filtering
AnisotropicSmoothing
Compute Curvature Anisotropic Diffusion
Compute Curvature Flow
Compute Gradient Anisotropic Diffusion
Perona Malik Anisotropic Diffusion on Grayscale Image
Smooth Image While Preserving Edges
Smooth Image While Preserving Edges (Curvature)
AntiAlias
Smooth Binary Image Before Surface Extraction
Binary Mathematical Morphology
Closing Binary Image
Dilate a Binary Image
Erode a Binary Image
Opening a Binary Image
Prune Binary Image
Thin Image
Colormap
Apply a Color Map to an Image
Create a Custom Color Map
Map Scalars Into Jet Colormap
Convolution
Color Normalized Correlation
Convolve Image With Kernel
Normalized Correlation
Normalized Correlation of Masked Image
Normalized Correlation Using FFT
Normalized Correlation Using FFT With Mask Images for Input Images
CurvatureFlow
Binary Min and Max Curvature Flow of Binary Image
Smooth Image Using Curvature Flow
Smooth Image Using Min Max Curvature Flow
Smooth RGB Image Using Curvature Flow
Smooth RGB Image Using Min Max Curvature Flow
DistanceMap
Approximate Distance Map of Binary Image
Maurer Distance Map of Binary Image
Mean Distance Between All Points on Two Curves
Signed Distance Map of Binary Image
FastMarching
Compute Geodesic Distance on Mesh
Create Distance Map From Seeds
FFT
Compute Forward FFT
Compute Image Spectral Density
Compute Inverse FFT of Image
Filter Image in Fourier Domain
ImageCompare
Absolute Value Of Difference Between Two Images
Combine Two Images With Checker Board Pattern
Squared Difference of Two Images
ImageCompose
Compose Vector From Three Scalar Images
Convert Real and Imaginary Images to Complex Image
Create Vector Image From Scalar Images
Join Images
ImageFeature
Add Gaussian Noise to an Image
Apply a Filter Only to a Specified Image Region
Apply a Filter to a Specified Region of an Image
Bilateral Filter an Image
Compute Laplacian
Detect Edges With Canny Edge Detection Filter
Compute Derivative
Extract Contours From Image
Find Zero Crossings in Signed Image
Laplacian Recursive Gaussian Image Filter
Segment Blood Vessels
Sharpen Image
Sobel Edge Detection Image Filter
Zero-crossing Based Edge Decor
ImageFilterBase
Apply Kernel to Every Pixel
Apply Kernel to Every Pixel in Non-Zero Image
Cast an Image to Another Type
Compute Local Noise in Image
Custom Operation to Corresponding Pixels in Two Images
Predefined Operation to Corresponding Pixels in Two Images
ImageFusion
Color Boundaries of Labeled Regions
Color Labeled Regions in Image
Overlay Label Map on Image
Overlay Label Map on Top of an Image
ImageGradient
Apply GradientRecursiveGaussianImageFilter
Apply GradientRecursiveGaussianImageFilter on Image With Vector type
Compute and Display Gradient of Image
Compute Gradient Magnitude of Grayscale Image
Compute Gradient Magnitude Recursive Gaussian of Grayscale Image
Gradient of Vector Image
Implementation of Snakes
ImageGrid
Append Two 3D Volumes
Change Image Origin Spacing or Direction
Create 3D Volume
Crop Image by Specifying Region
Extract Region of Interest in One Image
Fit Spline Into Point Set
Flip an Image Over Specified Axes
Pad an Image by Mirroring
Pad an Image With a Constant
Pad Image by Wrapping
Paste Image Into Another One
Permute Axes of an Image
Process a 2D Slice of a 3D Image
Resample an Image
Resample a Scalar Image
Resample a Vector Image
Run Image Filter on Region of Image
Shrink Image
Stack 2D Images Into 3D Image
Tile Images Side by Side
Upsample an Image
Warp an Image Using a Deformation Field
ImageIntensity
Absolute Value of Image
Add Constant to Every Pixel
Add Two Images Together
Apply Atan Image Filter
Apply Cos Image Filter
Apply Exp Negative Image Filter
Apply Sin Image Filter
Binary AND Two Images
Binary OR Two Images
Binary XOR Two Images
Cast Image to Another Type but Clamp to Output Range
Compare Two Images and Set Output Pixel to Max
Compare Two Images and Set Output Pixel to Min
Compute Edge Potential
Compute Sigmoid
Computer Magnitude in Vector Image to Make Magnitude Image
Convert RGB Image to Grayscale Image
Extract Component of Vector Image
Intensity Windowing
Inverse of Mask to Image
Invert Image
Mask Image
Multiply Image by Scalar
Multiply Two Images
Normalize Image
Pixel Division of Two Images
Rescale an Image
Scale All Pixel’s Sum to Constant
Square Every Pixel
Subtract Constant From Every Pixel
Subtract Two Images
Transform Magnitude of Vector Valued Image Pixels
ImageLabel
Extract Inner and Outer Boundaries of Blobs in Binary Image
Extract Boundaries of Connected Regions in Binary Image
Label Contours of Connect Components
ImageStatistics
Adaptive Histogram Equalization Image Filter
Apply Accumulate Image Filter
Compute Min, Max, Variance and Mean of Image
Compute PCA Shape From Training Sample
Statistical Properties of Labeled Regions
Calculate Image Moments
Calculate Image Moments of an Ellipse
LabelMap
Apply Morphological Closing on All Label Objects
Apply Morphological Closing on Specific Label Object
Convert itk::Image With Labels to Label Map
Convert Image With Labeled Regions to ShapeLabelMap
Convert Label Map to Normal Image
Extract Given Label Object
Invert Image Using Binary Not Operation
Keep Binary Regions That Meet Specific Properties
Keep Regions Above Certain Level
Keep Regions That Meet Specific Properties
Label Binary Regions and Get Properties
Label Binary Regions in Image
Mask One Image Given Label Map
Merge LabelMaps
Remove Holes Not Connected to Image Boundaries
Remove Labels From Label Map
Shape Attributes for Binary Image
MathematicalMorphology
Create a Binary Ball Structuring Element
Dilate a grayscale image
Erode a Grayscale Image
Erode Binary Image Using Flat Structure Element
Generate Structuring Elements With Accurate Area
Regional Maximal
Regional Minimal
Valued Regional Maxima Image
Valued Regional Minimal Image
Path
Data Structure for Piece-Wise Linear Curve
Extract Contours From Image
QuadEdgeMeshFiltering
Clean Quad Edge Mesh
Compute Normals of a Mesh
Compute Planar Parameterization of a Mesh
Delaunay Conform Edge Flipping
Smoothing
Blurring an Image Using a Binomial Kernel
Computes Smoothing With Gaussian Kernel
Find Higher Derivatives of Image
Mean Filtering of an Image
Median Filtering of an Image
Median Filtering of an RGB Image
Smooth Image With Discrete Gaussian Filter
Thresholding
Demonstrate Available Threshold Algorithms
Separate Foreround and Background Using Otsu Method
Threshold an Image
Threshold an Image Using Binary Thresholding
Threshold an Image Using Otsu
GPU
IO
GDCM
Read and Print DICOM Tags
Read DICOM Series and Write 3D Image
Resample DICOM Series
ImageBase
Convert File Formats
Convert Image to Another Type
Create 3D Volume From Series of 2D Images
Create a List of File Names
Generate Slices From Volume
Process Image Chunks
Read an Image
Read Unknown Image Type
Register IO Factories
Write an Image
Mesh
Read Mesh
TIFF
Write a TIFF Image
TransformBase
Read Transform From File
Write Transform From File
TransformFactory
Register Transform With Transform Factory
Numerics
Optimizers
Amoeba Optimizer
Exhaustive Optimizer
Visualize Parameter Space with Exhaustive Optimizer
Levenberg-Marquardt Optimization
Statistics
2D Gaussian Mixture Model Expectation Maximum
Compute Histogram From Grayscale Image
Compute Histogram of Masked Region in Image
Compute Texture Features
Create Gaussian Distribution
Create Histogram From List of Measurements
Create List of Sample Measurements
Create List of Samples From Image Without Duplication
Create List of Samples With Associated ID’s
Distribute Sampling Using GMM EM
Distribution of Pixels Using GMM EM
Histogram Creation and Bin Access
Spatial Search
Nonunit
Review
Geometric Properties of Labeled Region
Multiphase Chan and Vese Sparse Field Level Set Segmentation
Segment Blood Vessels With Multi-Scale Hessian-Based Measure
Singlephase Chan and Vese Dense Field Level Set Segmentation
Singlephase Chan and Vese Sparse Field Level Set Segmentation
Registration
Common
Compute Mean Squares Metric Between Two Images
Global Registration of Two Images
Match Feature Points
Multiresolution Pyramid From Image
Mutual Information
Mutual Information Metric
Perform 2D Translation Registration With Mean Squares
Perform Multi Modality Registration With Viola Wells Mutual Information
Register Image to Another Using Landmarks
Watch Registration
Metricsv4
Perform Registration on Vector Images
Register Two Point Sets
Register Two Point Sets
Segmentation
Classifiers
Cluster Pixels in Grayscale Image
K-Means Clustering
K Means Cluster of Pixels in Image
ConnectedComponents
Assign Contiguous Labels to Connected Regions in an Image
Extra Largest Connect Component From Binary Image
Label Connect Components in Binary Image
Label Connect Components in Grayscale Image
KLMRegionGrowing
Basic Region Growing
LabelVoting
Iterative Hole Filling
LevelSets
Segment With Geodesic Active Contour Level Set
RegionGrowing
Connected Components in Image
Segment Pixels With Similar Statistics
Voronoi
Voronoi Diagram
Watersheds
Morphological Watershed Segmentation
Watershed Image Filter
Video
BridgeOpenCV
Convert an ITK Gray Scale Image to CV Mat
Examples
Segmentation
LabelVoting
LabelVoting
#
Iterative Hole Filling
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